org.simBio.sim.analyzer.graph
Class BasicGraph

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Analyzer
                  org.simBio.sim.analyzer.VisualizeAnalyzer
                      org.simBio.sim.analyzer.graph.AbstractGraph
                          org.simBio.sim.analyzer.graph.BasicGraph

All Implemented Interfaces:

Node

Direct Known Subclasses:

Graph, RelationGraph

public abstract class BasicGraph
extends AbstractGraph

Graph which displays time series data.

Notice

1. Supports redrawing
2. Does not optimise redrawing operations for the screen.
3. Can be used as a base for the general Graph group.

Version:

$Id: BasicGraph.java,v 1.3 2007/04/07 08:44:07 nsarai Exp $

Author:

misaki

Field Summary

protected java.awt.Container	container container of the Viewer which the Graph belongs to
protected java.awt.Graphics2D	graphics2d Graphics2D for redrawing during analyze()
protected TimeSeriesValues	values storage location of the time series data

Fields inherited from class org.simBio.sim.analyzer.graph.AbstractGraph

axisX, axisY, interval, log, maxTime, nextTime, nTarget, nTargetOrigin, page, plotDisplay, plotPrinter, target, targetName, targetScale, targetShortName, thisGraph, valuesBuffer

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

BasicGraph()

Method Summary

protected void	analyzeSub(double t, double[] valuesBuffer, IPlot plot) Plot targets.
double	getTimeMax() Get maximum time
double	getTimeMin() Get minimum time
TimeSeriesSingle	getTimeSeries(java.lang.Object node) Gets a time series class for the specified Node.
protected void	paintGraph(java.awt.Graphics2D graphics2d, IPlot plot) Draw graph.
protected void	paintGraphSub(java.awt.Graphics2D graphics2d, IPlot plot) Performs graph drawing. Faithfully plots the value of each instant.
protected void	prepare() Set link to the targets.
protected void	printGraph(java.awt.Graphics2D graphics2d, IPlot plot) Draw graph.
protected void	quit() called before destruction, instanceを破棄する前に呼び出されます。
void	resetBuffer() 画面状態をリセットする.
protected void	resize(IPlot plot) Recalculates the Graph size, based on the size of the current parent window.
protected void	setLinks() Link to the Viewer, AxisX, AxisY and count number of the target, get array.

Methods inherited from class org.simBio.sim.analyzer.graph.AbstractGraph

analyze, changeScale, doRepaint, drawLine, drawPoint, paintAxises, paintBackground, paintComponent, paintLegend, prepareRepaint, printAxises, printBackground, printComponent, printLegend, setAreaChanged

Methods inherited from class org.simBio.sim.analyzer.VisualizeAnalyzer

getColorParameter, getDouble, getFontParameter, getNodeHierarchically, getNodeRecursive, repaint

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

values

protected TimeSeriesValues values

storage location of the time series data

graphics2d

protected java.awt.Graphics2D graphics2d

Graphics2D for redrawing during analyze()

container

protected java.awt.Container container

container of the Viewer which the Graph belongs to

Constructor Detail

BasicGraph

public BasicGraph()

Method Detail

resetBuffer

public void resetBuffer()

Description copied from class: VisualizeAnalyzer

画面状態をリセットする. 新しいmodelをロードしたり(setLinks())、 時刻を変更した後に計算処理を行ったり(org.simBio.sim.gui.GUI#getJMenuModel()) した際に、呼び出され、描画再描画用のバッファなど、各Nodeで持っている内部状態を リセットします。
下位のnodeを持つ場合については、明示的に呼び出してやるように、super() を 呼ぶようにしてください。

Overrides:

resetBuffer in class VisualizeAnalyzer

quit

protected void quit()

Description copied from class: Component

called before destruction,
instanceを破棄する前に呼び出されます。

Overrides:

quit in class Component

setLinks

protected void setLinks()

Description copied from class: AbstractGraph

Link to the Viewer, AxisX, AxisY and count number of the target, get array.

Overrides:

setLinks in class AbstractGraph

See Also:

Component.setLinks()

prepare

protected void prepare()

Description copied from class: AbstractGraph

Set link to the targets.

Overrides:

prepare in class AbstractGraph

See Also:

Component.prepare()

analyzeSub

protected void analyzeSub(double t,
                          double[] valuesBuffer,
                          IPlot plot)

Plot targets.

Specified by:

analyzeSub in class AbstractGraph

Parameters:

t - time

valuesBuffer - array of calculation results

plot - drawing operation object

See Also:

AbstractGraph.analyzeSub(double, double[], IPlot)

resize

protected void resize(IPlot plot)

Description copied from class: AbstractGraph

Recalculates the Graph size, based on the size of the current parent window.

Overrides:

resize in class AbstractGraph

Parameters:

plot - drawing operation object

paintGraph

protected void paintGraph(java.awt.Graphics2D graphics2d,
                          IPlot plot)

Description copied from class: AbstractGraph

Draw graph.

Specified by:

paintGraph in class AbstractGraph

Parameters:

graphics2d - drawn Graphics

plot - drawing operation object

printGraph

protected void printGraph(java.awt.Graphics2D graphics2d,
                          IPlot plot)

Description copied from class: AbstractGraph

Draw graph. Called by JPanel#printComponent() on Event thread.

Overrides:

printGraph in class AbstractGraph

Parameters:

graphics2d - Graphics which are drawn

plot - drawing operation object

paintGraphSub

protected void paintGraphSub(java.awt.Graphics2D graphics2d,
                             IPlot plot)

Performs graph drawing. Faithfully plots the value of each instant.

Parameters:

graphics2d - Graphics drawing object

plot - drawing operation object

getTimeMax

public double getTimeMax()

Get maximum time

Returns:

maximum time

getTimeMin

public double getTimeMin()

Get minimum time

Returns:

minimum time

getTimeSeries

public TimeSeriesSingle getTimeSeries(java.lang.Object node)

Gets a time series class for the specified Node.

Parameters:

node - Node that you wish to get

Returns:

time series class instance