org.simBio.sim.analyzer.graph
Class Graph

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Analyzer
                  org.simBio.sim.analyzer.VisualizeAnalyzer
                      org.simBio.sim.analyzer.graph.AbstractGraph
                          org.simBio.sim.analyzer.graph.BasicGraph
                              org.simBio.sim.analyzer.graph.Graph

All Implemented Interfaces:

Node

Direct Known Subclasses:

Graph4State, StepChart

public class Graph
extends BasicGraph

Graph (optimised) which displays 2D graph data in chronological order.

Notice

• Supports redrawing.
• Performs a screen optimisation for redrawing operations.

Version:

$Id: Graph.java,v 1.3 2007/04/07 08:44:07 nsarai Exp $

Author:

Nobuaki Sarai, misaki

Field Summary

protected GraphReplotBuffer[]

replotBuffer Redrawing buffer

Fields inherited from class org.simBio.sim.analyzer.graph.BasicGraph

container, graphics2d, values

Fields inherited from class org.simBio.sim.analyzer.graph.AbstractGraph

axisX, axisY, interval, log, maxTime, nextTime, nTarget, nTargetOrigin, page, plotDisplay, plotPrinter, target, targetName, targetScale, targetShortName, thisGraph, valuesBuffer

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Graph()

Method Summary

protected void	analyzeSub(double t, double[] valuesBuffer, IPlot plot) Plots targets.
void	changeScale() Makes the necessary preparations for redrawing, when the display position / display range has changed
protected void	end() Called when the calculations finish, and makes adjustments to the X axis, if necessary.
protected void	paintGraph(java.awt.Graphics2D graphics, IPlot plot) Draws a graph.
protected void	prepare() Set link to the targets.
protected void	quit() called before destruction, instanceを破棄する前に呼び出されます。
void	resetBuffer() Resets the screen state.
protected void	resize(IPlot plot) Recalculates the Graph size, based on the size of the parent window.
void	setAreaChanged() Notifies that the displayed area has changed.

Methods inherited from class org.simBio.sim.analyzer.graph.BasicGraph

getTimeMax, getTimeMin, getTimeSeries, paintGraphSub, printGraph, setLinks

Methods inherited from class org.simBio.sim.analyzer.graph.AbstractGraph

analyze, doRepaint, drawLine, drawPoint, paintAxises, paintBackground, paintComponent, paintLegend, prepareRepaint, printAxises, printBackground, printComponent, printLegend

Methods inherited from class org.simBio.sim.analyzer.VisualizeAnalyzer

getColorParameter, getDouble, getFontParameter, getNodeHierarchically, getNodeRecursive, repaint

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

replotBuffer

protected GraphReplotBuffer[] replotBuffer

Redrawing buffer

Constructor Detail

Graph

public Graph()

Method Detail

resetBuffer

public void resetBuffer()

Resets the screen state.

Overrides:

resetBuffer in class BasicGraph

See Also:

VisualizeAnalyzer.resetBuffer()

quit

protected void quit()

Description copied from class: Component

called before destruction,
instanceを破棄する前に呼び出されます。

Overrides:

quit in class BasicGraph

prepare

protected void prepare()

Description copied from class: AbstractGraph

Set link to the targets.

Overrides:

prepare in class BasicGraph

See Also:

Component.prepare()

analyzeSub

protected void analyzeSub(double t,
                          double[] valuesBuffer,
                          IPlot plot)

Plots targets.

Overrides:

analyzeSub in class BasicGraph

Parameters:

t - time

valuesBuffer - array of calculation results

plot - drawing operation object

See Also:

AbstractGraph.analyzeSub(double, double[], org.simBio.sim.analyzer.graph.plot.IPlot)

paintGraph

protected void paintGraph(java.awt.Graphics2D graphics,
                          IPlot plot)

Draws a graph.

Overrides:

paintGraph in class BasicGraph

Parameters:

graphics - drawn Graphics

plot - drawing operation object

See Also:

AbstractGraph.paintGraph(Graphics2D graphics2d, IPlot plot)

resize

protected void resize(IPlot plot)

Recalculates the Graph size, based on the size of the parent window.

Overrides:

resize in class BasicGraph

Parameters:

plot - drawing operation object

See Also:

AbstractGraph.resize(IPlot)

changeScale

public void changeScale()

Makes the necessary preparations for redrawing, when the display position / display range has changed

Overrides:

changeScale in class AbstractGraph

See Also:

AbstractGraph.changeScale()

end

protected void end()

Called when the calculations finish, and makes adjustments to the X axis, if necessary.

Overrides:

end in class Component

See Also:

Component.end()

setAreaChanged

public void setAreaChanged()

Notifies that the displayed area has changed.

Overrides:

setAreaChanged in class AbstractGraph

See Also:

AbstractGraph.setAreaChanged()