org.simBio.sim.analyzer.graph
Class RelationGraph

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Analyzer
                  org.simBio.sim.analyzer.VisualizeAnalyzer
                      org.simBio.sim.analyzer.graph.AbstractGraph
                          org.simBio.sim.analyzer.graph.BasicGraph
                              org.simBio.sim.analyzer.graph.RelationGraph

All Implemented Interfaces:

Node

public class RelationGraph
extends BasicGraph

2D graph of relation between two parameters.

Notice

• Allocates AbstractGraph.target[0] for Base node use, and assumes that AbstractGraph.nTargetOrigin = 1.
• Generally, because the X axis is not the time axis, the redrawing takes time and is carried out for all the time. (Because of Swing double-buffering, the drawing operation cannot be seen with the eye)

Version:

$Id: RelationGraph.java,v 1.3 2007/04/23 09:05:46 nsarai Exp $

Author:

Kenta Hori

Field Summary

protected static Log

log

Fields inherited from class org.simBio.sim.analyzer.graph.BasicGraph

container, graphics2d, values

Fields inherited from class org.simBio.sim.analyzer.graph.AbstractGraph

axisX, axisY, interval, maxTime, nextTime, nTarget, nTargetOrigin, page, plotDisplay, plotPrinter, target, targetName, targetScale, targetShortName, thisGraph, valuesBuffer

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

RelationGraph()

Method Summary

protected void	analyzeSub(double t, double[] valuesBuffer, IPlot plot) Plot targets.
protected void	paintGraphSub(java.awt.Graphics2D graphics2d, IPlot plot) Performs graph drawing. Faithfully plots the value of each instant.
protected void	setLinks() Link to the Viewer, AxisX, AxisY and count number of the target, get array.

Methods inherited from class org.simBio.sim.analyzer.graph.BasicGraph

getTimeMax, getTimeMin, getTimeSeries, paintGraph, prepare, printGraph, quit, resetBuffer, resize

Methods inherited from class org.simBio.sim.analyzer.graph.AbstractGraph

analyze, changeScale, doRepaint, drawLine, drawPoint, paintAxises, paintBackground, paintComponent, paintLegend, prepareRepaint, printAxises, printBackground, printComponent, printLegend, setAreaChanged

Methods inherited from class org.simBio.sim.analyzer.VisualizeAnalyzer

getColorParameter, getDouble, getFontParameter, getNodeHierarchically, getNodeRecursive, repaint

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

log

protected static Log log

Constructor Detail

RelationGraph

public RelationGraph()

Method Detail

setLinks

protected void setLinks()

Description copied from class: AbstractGraph

Link to the Viewer, AxisX, AxisY and count number of the target, get array.

Overrides:

setLinks in class BasicGraph

See Also:

Component.setLinks()

analyzeSub

protected void analyzeSub(double t,
                          double[] valuesBuffer,
                          IPlot plot)

Plot targets.

Overrides:

analyzeSub in class BasicGraph

Parameters:

t - time

valuesBuffer - array of calculation results

plot - drawing operation object

See Also:

AbstractGraph.analyzeSub(double, double[], org.simBio.sim.analyzer.graph.plot.IPlot)

paintGraphSub

protected void paintGraphSub(java.awt.Graphics2D graphics2d,
                             IPlot plot)

Description copied from class: BasicGraph

Performs graph drawing. Faithfully plots the value of each instant.

Overrides:

paintGraphSub in class BasicGraph

Parameters:

graphics2d - Graphics drawing object

plot - drawing operation object