org.simBio.bio.kuzumoto_et_al_2007.current.cf
Class ICFTR

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter
                          org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
                              org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICFTR

All Implemented Interfaces:

Node

public class ICFTR
extends CfChannel

Cystic fibrosis transmembrane conductance regulator Cl^- channel current. Phosphorylation is incorporated.

Version:

$Id: ICFTR.java,v 1.1 2007/12/15 07:21:54 nsarai Exp $

Author:

Masanori Kuzumoto

See Also:

Kuzumoto et al, 2007., ICFTR

Field Summary

Node	ATP concentration of intracellular ATP [mM]
Node	PKA PKA catalitic domain I concentration
Node	POpen open probability

Fields inherited from class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

Cm, constantFieldCa, constantFieldCl, constantFieldK, constantFieldNa, permeabilityCa, permeabilityCl, permeabilityK, permeabilityNa, pOpen

Fields inherited from class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter

cCl, CCl, currentCl

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

ICFTR()

Method Summary

protected void	calculate(double t) add Cl current to Compartment.
void	prepare() construct null current

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

ATP

public Node ATP

concentration of intracellular ATP [mM]

PKA

public Node PKA

PKA catalitic domain I concentration

POpen

public Node POpen

open probability

Constructor Detail

ICFTR

public ICFTR()

Method Detail

prepare

public void prepare()

Description copied from class: MembraneTransporter

construct null current

Overrides:

prepare in class MembraneTransporter

See Also:

Component.prepare()

calculate

protected void calculate(double t)

Description copied from class: MembraneTransporter

add Cl current to Compartment.

Overrides:

calculate in class CfChannel

Parameters:

t - time

See Also:

CfChannel.calculate(double)