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java.lang.Object java.util.AbstractCollection java.util.AbstractList java.util.ArrayList org.simBio.core.VariableList
public abstract class VariableList
include euler engine & dt adjuster
Field Summary | |
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protected double |
minDt
minimum dt |
protected ReactorList |
reactors
list of reactors |
Fields inherited from class java.util.AbstractList |
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modCount |
Constructor Summary | |
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VariableList()
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Method Summary | |
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protected double |
adjustDt()
restrict maximum dy/Y and adjust time step 全てのVariableの最大のdy/yが閾値に合うように、time stepを決定する。 2004/11/12 dtが残り計算時間をオーバーしないように制限。 TODO 時々dt=0となってしまうことがある。 |
void |
logIndented()
log all Euler's indented name 全てのVariableの名前をログに書き出す。 |
void |
prepare(double min,
double max,
double dyY,
double duration)
call all Euler's start() dt controlの閾値を設定し、全てのVariableのstart()を呼び出す。 |
void |
setLinks(ReactorList reactors)
set reactor list for calculate dydt |
abstract double |
update(double t)
solve ordinary differential equations |
Methods inherited from class java.util.ArrayList |
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add, add, addAll, addAll, clear, clone, contains, ensureCapacity, get, indexOf, isEmpty, lastIndexOf, remove, remove, removeRange, set, size, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
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equals, hashCode, iterator, listIterator, listIterator, subList |
Methods inherited from class java.util.AbstractCollection |
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containsAll, removeAll, retainAll, toString |
Methods inherited from class java.lang.Object |
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finalize, getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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containsAll, equals, hashCode, iterator, listIterator, listIterator, removeAll, retainAll, subList |
Field Detail |
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protected double minDt
protected ReactorList reactors
Constructor Detail |
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public VariableList()
Method Detail |
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public abstract double update(double t)
t
- elapsed time
public void setLinks(ReactorList reactors)
reactors
- public void prepare(double min, double max, double dyY, double duration)
min
- minimum time stepmax
- maximum time stepdyY
- restrict maximum dy/Y and adjust time stepduration
- to calculateprotected double adjustDt()
public void logIndented()
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