org.simBio.bio.sarai_noma_2004.fourState
Class ODE

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.sarai_noma_2004.fourState.ODE

All Implemented Interfaces:

Node

Direct Known Subclasses:

MonteCarlo

public abstract class ODE
extends Reactor

Created on 2003/10/30

Version:

$Revision: 1.1 $

Author:

Nobuaki Sarai

Field Summary

protected Node	pAI
protected Node	pAP
protected Node	pRP

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

ODE()

Method Summary

protected void	calculate(double t) calculate state probability by ODE.
protected void	prepare() read initial values from GUI.
protected void	setLinks() set arias for gates

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

pAI

protected Node pAI

pAP

protected Node pAP

pRP

protected Node pRP

Constructor Detail

ODE

public ODE()

Method Detail

setLinks

protected void setLinks()

set arias for gates

Overrides:

setLinks in class Component

See Also:

Component.setLinks()

prepare

protected void prepare()

read initial values from GUI.

Overrides:

prepare in class Parameter

See Also:

Component.prepare()

calculate

protected void calculate(double t)

calculate state probability by ODE.

Specified by:

calculate in class Reactor

Parameters:

t -