org.simBio.bio.oka_et_al_2006.structure
Class GapJunctionK

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.Compartment
                      org.simBio.bio.oka_et_al_2006.structure.GapJunction
                          org.simBio.bio.oka_et_al_2006.structure.GapJunctionK

All Implemented Interfaces:

Node

public class GapJunctionK
extends GapJunction

Gap junction model. It is assumed that the current is carried by K⁺ via gap junctions between connected cells.

Version:

$Revision: 1.1 $

Author:

Chiaki Oka

See Also:

GapJunction.ja.doc (Japanese, WORD doc)

Field Summary

double	F Faraday constant, default value = 96.4867
Node	Ki1 intracellular K+ concentration of cell #1 (mM)
Node	Ki2 intracellular K+ concentration of cell #2 (mM)
Node	volume1 cell volume of cell #1 (um3)
Node	volume2 cell volume of cell #2 (um3)
double	z valence, default value = 1.0

Fields inherited from class org.simBio.bio.oka_et_al_2006.structure.GapJunction

Cm1, Cm2, conductance, Vm1, Vm2

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

GapJunctionK()

Method Summary

protected void	calculate(double t) Calculate the gap junctional current (pA)
protected void	prepare() 親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

volume1

public Node volume1

cell volume of cell #1 (um³)

volume2

public Node volume2

cell volume of cell #2 (um³)

Ki1

public Node Ki1

intracellular K⁺ concentration of cell #1 (mM)

Ki2

public Node Ki2

intracellular K⁺ concentration of cell #2 (mM)

F

public double F

Faraday constant, default value = 96.4867

z

public double z

valence, default value = 1.0

Constructor Detail

GapJunctionK

public GapJunctionK()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: GapJunction

Calculate the gap junctional current (pA)

Overrides:

calculate in class GapJunction

Parameters:

t - time

See Also:

Reactor.calculate(double)

prepare

protected void prepare()

Description copied from class: Parameter

親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Overrides:

prepare in class Parameter

See Also:

Component.prepare()