org.simBio.bio.matsuoka_et_al_2003.function
Class Current

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.function.Current

All Implemented Interfaces:

IResetBeforeCalc, Node

public class Current
extends Reactor
implements IResetBeforeCalc

Calculate concentration (mM) change from current (pA).

Version:

$Id: Current.java,v 1.2 2007/10/17 04:26:16 nsarai Exp $

Author:

Nobuaki Sarai

See Also:

XML example, explanation (Japanese, WORD doc)

Field Summary

double	F Faraday Constant (Coulomb/mM)
Node	in internal ion concentration (mM)
Node	out external ion concentration (mM)
double	valence ion valence
Node	Vi internal volume (um^3)
Node	Vo external volume (um^3)

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Current()

Method Summary

protected void	calculate(double t) convert current (pA) to d[X]/dt (mM)
protected void	prepare() 親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Vi

public Node Vi

internal volume (um^3)

Vo

public Node Vo

external volume (um^3)

in

public Node in

internal ion concentration (mM)

out

public Node out

external ion concentration (mM)

valence

public double valence

ion valence

F

public double F

Faraday Constant (Coulomb/mM)

Constructor Detail

Current

public Current()

Method Detail

calculate

protected void calculate(double t)

convert current (pA) to d[X]/dt (mM)

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)

See Also:

Reactor.calculate(double)

prepare

protected void prepare()

Description copied from class: Parameter

親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Overrides:

prepare in class Parameter

See Also:

Component.prepare()