org.simBio.bio.kuzumoto_et_al_2007.current
Class IRyR

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

All Implemented Interfaces:

Node

public class IRyR
extends MembraneTransporter

Calcium releasing channel on SR.

Version:

$Id: IRyR.java,v 1.1 2007/12/15 07:21:54 nsarai Exp $

Author:

Hiroyuki Nakai, Masanori Kuzumoto

See Also:

Kuzumoto et al, 2007., IRyR

Field Summary

Node	CaDiadic local Ca2+ concentration near the mouth of RyR channel.
Node	Cai intracellular calcium concentration (mM)
Node	Cao calcium concentration in SR release site (mM)
Node	CICRfactor
Node	close close state probability
double	Cm membrane capacitance (pF)
double	diadicFactor Ca diadicFactor
Node	K1
Node	k1xclose
Node	K2
double	k2_1
double	k2_2
Node	K3
double	k3_1
double	k3_hill
Node	open open state probability
double	permeabilityCa membrane permeability

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

IRyR()

Method Summary

protected void	calculate(double t) add current to Compartment.
protected void	prepare() construct null current

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

open

public Node open

open state probability

close

public Node close

close state probability

Cai

public Node Cai

intracellular calcium concentration (mM)

Cao

public Node Cao

calcium concentration in SR release site (mM)

CaDiadic

public Node CaDiadic

local Ca²⁺ concentration near the mouth of RyR channel.

diadicFactor

public double diadicFactor

Ca diadicFactor

Cm

public double Cm

membrane capacitance (pF)

permeabilityCa

public double permeabilityCa

membrane permeability

k2_1

public double k2_1

k2_2

public double k2_2

k3_1

public double k3_1

k3_hill

public double k3_hill

K1

public Node K1

K2

public Node K2

K3

public Node K3

CICRfactor

public Node CICRfactor

k1xclose

public Node k1xclose

Constructor Detail

IRyR

public IRyR()

Method Detail

prepare

protected void prepare()

Description copied from class: MembraneTransporter

construct null current

Overrides:

prepare in class MembraneTransporter

See Also:

Component.prepare()

calculate

protected void calculate(double t)

Description copied from class: MembraneTransporter

add current to Compartment.

Overrides:

calculate in class MembraneTransporter

Parameters:

t - time