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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin
public class Troponin
troponin of Negroni and Lascano contraction model. Modified the scale factor dX/dt to make stable with load.
Field Summary | |
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Node |
ATP
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protected double |
BIAS
|
Node |
Ca
|
Node |
CaTotal
|
Node |
dATP
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Node |
dXdt
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protected double |
dXdtFactor
|
Node |
L
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protected double |
La
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protected double |
r1
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protected double |
r2
adjusted by 2.5 * r1 |
Node |
T
|
Node |
TCa
|
Node |
TCaCB
|
Node |
TCB
|
double |
Tt
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protected double |
Y1
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protected double |
Y2
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protected double |
Y3
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protected double |
Y4
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protected double |
Yd
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protected double |
Z1
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protected double |
Z2
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protected double |
Z3
|
Fields inherited from class org.simBio.core.Parameter |
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value |
Constructor Summary | |
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Troponin()
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Method Summary | |
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protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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protected double r1
protected double r2
protected double BIAS
protected double Y1
protected double Z1
protected double Y2
protected double Z2
protected double Y3
protected double Z3
protected double Y4
protected double Yd
protected double La
public double Tt
protected double dXdtFactor
public Node T
public Node TCa
public Node TCaCB
public Node TCB
public Node L
public Node dXdt
public Node Ca
public Node CaTotal
public Node ATP
public Node dATP
Constructor Detail |
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public Troponin()
Method Detail |
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protected void calculate(double t)
Reactor
calculate
in class Reactor
t
- elapsed time (ms)
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