org.simBio.core.integrator
Class Concentration

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.integrator.Euler
              org.simBio.core.integrator.Positive
                  org.simBio.core.integrator.Concentration

All Implemented Interfaces:

Node, Variable

public class Concentration
extends Positive

The amount of ion (or molecule) is hold as value. The concentration (=amount/volume) is used as interface to other instance. The "volume" should be defined in advance in the XML.

Version:

$Log: Concentration.java,v $ Revision 1.1 2005/11/01 06:32:39 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:29 sarai rearrenge folder structure as a Maven style Revision 1.4 2005/08/04 07:55:41 sarai revise Javadoc
Revision 1.3 2005/08/04 07:47:19 sarai merge with branch dev_terashima_et_al_2005
Revision 1.1.2.1 2005/06/15 05:33:38 sarai refactored Concentration to org.simBio.core.integrator

Author:

Chiaki Oka

Field Summary

Fields inherited from class org.simBio.core.integrator.Euler

dydt

Fields inherited from class org.simBio.core.Parameter

value

Fields inherited from interface org.simBio.core.Variable

TINY

Constructor Summary

Concentration()

Method Summary

void	addDydt(double d) always throws UnsupportedOperationException, need to implement 'Node'
void	addValue(double value) log warn, this Method should not be used.
double	getDydt() return dy/dt dy/dtの値を返す。
double	getValue() always throws UnsupportedOperationException, need to implement 'Node'
java.lang.String	getValueString() 文字列として現在値を返す。
void	setInitializer(Initializer initializer) set initial amount.
void	setValue(double newValue) log warn, this Method should not be used.
void	setValueString(java.lang.String label) 文字列を受け取り現在値に設定する。 updateObserverに通知する。

Methods inherited from class org.simBio.core.integrator.Positive

update

Methods inherited from class org.simBio.core.integrator.Euler

getDydtOverY

Methods inherited from class org.simBio.core.Parameter

prepare, setValueToField

Methods inherited from class org.simBio.core.Component

accept, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Concentration

public Concentration()

Method Detail

addDydt

public void addDydt(double d)

Description copied from class: Component

always throws UnsupportedOperationException, need to implement 'Node'

Specified by:

addDydt in interface Node

Overrides:

addDydt in class Euler

Parameters:

d - dy/dt

See Also:

Euler.addDydt(double)

getDydt

public double getDydt()

Description copied from interface: Variable

return dy/dt
dy/dtの値を返す。

Specified by:

getDydt in interface Variable

Overrides:

getDydt in class Euler

Returns:

dy/dt

See Also:

Euler.getDydt()

addValue

public void addValue(double value)

Description copied from class: Euler

log warn, this Method should not be used.

Specified by:

addValue in interface Node

Overrides:

addValue in class Euler

See Also:

Node.addValue(double)

getValue

public double getValue()

Description copied from class: Component

always throws UnsupportedOperationException, need to implement 'Node'

Specified by:

getValue in interface Node

Overrides:

getValue in class Parameter

Returns:

value

See Also:

Node.getValue()

getValueString

public java.lang.String getValueString()

Description copied from class: Component

文字列として現在値を返す。

Overrides:

getValueString in class Parameter

Returns:

value as String

See Also:

Parameter.getValueString()

setInitializer

public void setInitializer(Initializer initializer)

set initial amount.

Overrides:

setInitializer in class Parameter

See Also:

Parameter.setInitializer(org.simBio.core.Initializer)

setValue

public void setValue(double newValue)

Description copied from class: Euler

log warn, this Method should not be used.

Specified by:

setValue in interface Node

Overrides:

setValue in class Euler

See Also:

Node.setValue(double)

setValueString

public void setValueString(java.lang.String label)

Description copied from class: Component

文字列を受け取り現在値に設定する。 updateObserverに通知する。

Overrides:

setValueString in class Parameter

Parameters:

label - value as String

See Also:

Parameter.setValueString(java.lang.String)