org.simBio.bio.terashima_et_al_2006.function
Class TotalVolume

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.terashima_et_al_2006.function.TotalVolume

All Implemented Interfaces:

Node

public class TotalVolume
extends Reactor

Calculate total cell volume from cell volume accessible for ion diffusion.

Version:

$Log: TotalVolume.java,v $ Revision 1.1 2005/11/01 06:32:40 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/10/17 07:53:05 mikael Moved from branch dev_terashima_et_al_2005 Revision 1.1.2.2 2005/07/01 12:21:55 sarai revised Javadoc
Revision 1.1.2.1 2005/06/30 08:21:07 sarai calculate total cell volume, separated from VolumeRatio

Author:

Sarai

See Also:

TotalVolume.xml for example

Field Summary

Node	Vi the osmotically active cell volume (um^3)
double	Vn the osmotically inactive cell volume (um^3)

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

TotalVolume()

Method Summary

protected void	calculate(double t) calculate value = Vt.
protected void	end() Update the value at the end of calculation.
protected void	prepare() Keep initial volume.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Vi

public Node Vi

the osmotically active cell volume (um^3)

Vn

public double Vn

the osmotically inactive cell volume (um^3)

Constructor Detail

TotalVolume

public TotalVolume()

Method Detail

prepare

protected void prepare()

Keep initial volume.

Overrides:

prepare in class Parameter

See Also:

Parameter.prepare()

calculate

protected void calculate(double t)

calculate value = Vt.

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)

See Also:

Reactor.calculate(double)

end

protected void end()

Update the value at the end of calculation.

Overrides:

end in class Component

See Also:

Component.end()