org.simBio.bio.terashima_et_al_2006.function
Class KoDependency2

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.function.Function
                      org.simBio.bio.terashima_et_al_2006.function.KoDependency2

All Implemented Interfaces:

Node

public class KoDependency2
extends Function

Calculate Ko dependency for IKATP.

Version:

$Id: KoDependency2.java,v 1.2 2006/11/08 02:46:32 nsarai Exp $

Author:

SAITO Ryuta

Field Summary

double	amplitude amplitude
double	constant constant
Node	Ko out side Potassium concentration
double	number channel number
double	power power

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

KoDependency2()

Method Summary

protected void

calculate(double t) !! INSTRUCTION !! "amplitude * ([K]o / constant)^power" is the single channel conductance.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Ko

public Node Ko

out side Potassium concentration

amplitude

public double amplitude

amplitude

constant

public double constant

constant

power

public double power

power

number

public double number

channel number

Constructor Detail

KoDependency2

public KoDependency2()

Method Detail

calculate

protected void calculate(double t)

!! INSTRUCTION !! "amplitude * ([K]o / constant)^power" is the single channel conductance. "N" should be designated in XML, that is the number of channels per cell. First, gamma was calcurated as "amplitude * ([K]o / constant)^power". And then, the calculated total channel conductance was divided by Cm (= 132).

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (not used)