org.simBio.bio.terashima_et_al_2006.experiment
Class VolumeRatio

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.terashima_et_al_2006.experiment.VolumeRatio

All Implemented Interfaces:

Node

public class VolumeRatio
extends Reactor

Calculate volume ratio to initial volume.

Version:

$Log: VolumeRatio.java,v $ Revision 1.1 2005/11/01 06:32:39 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/10/17 07:53:06 mikael Moved from branch dev_terashima_et_al_2005 Revision 1.1.2.5 2005/07/01 12:21:55 sarai revised Javadoc
Revision 1.1.2.4 2005/06/30 08:21:07 sarai calculate total cell volume, separated from VolumeRatio
2005/06/10 06:15:15 Sarai moved to simBio branch dev_terashima_et_al_2005
2005/06/08 06:12:44 Sarai separate volumeRatio from WaterFlux

Author:

Terashima, Sarai

See Also:

Sasaki et al., 1999 VolumeRatio.xml for example

Field Summary

Node	Vt total cell volume (um^3)

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

VolumeRatio()

Method Summary

protected void	calculate(double t) calculate value = Vt ratio.
protected void	end() Update the value at the end of calculation.
protected void	prepare() Keep initial volume.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Vt

public Node Vt

total cell volume (um^3)

Constructor Detail

VolumeRatio

public VolumeRatio()

Method Detail

prepare

protected void prepare()

Keep initial volume.

Overrides:

prepare in class Parameter

See Also:

Parameter.prepare()

calculate

protected void calculate(double t)

calculate value = Vt ratio.

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)

See Also:

Reactor.calculate(double)

end

protected void end()

Update the value at the end of calculation.

Overrides:

end in class Component

See Also:

Component.end()