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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
public class ICaL
L-type Ca channel with amplitude factor.
Sarai et al, 2006
Advance Publication
Field Summary | |
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double |
amplitude
amplitude factor |
Node |
ATP
intracellular ATP concentration (mM) |
Node |
CaDiadic
local Ca2+ concentration near the mouth of L-type Ca channel (mM) |
Node |
Cai
intracellular calcium concentration (mM) |
Node |
gate
ultra-slow gate probability |
Node |
pAI
AI state probability for voltage-dependent gate |
Node |
pAP
AP state probability for voltage-dependent gate |
Node |
pC
C state probability for calcium-dependent gate |
double |
permeabilityCaMax
maximum Ca permeability |
Node |
pRP
PR state probability for voltage-dependent gate |
Node |
pU
U state probability for calcium-dependent gate |
Node |
pUCa
UCa state probability for calcium-dependent gate |
Node |
sumCa
integration of ICaL |
Node |
Vm
membrane potential (mV) |
double |
Vshift
a shift of activation potential for 4 state voltage gate |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel |
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constantFieldCa, constantFieldK, constantFieldNa, permeabilityCa, permeabilityK, permeabilityNa, pOpen |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter |
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cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total |
Fields inherited from class org.simBio.core.Parameter |
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value |
Constructor Summary | |
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ICaL()
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Method Summary | |
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protected void |
calculate(double t)
add current to Compartment. |
protected void |
prepare()
construct null current |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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public double amplitude
public double permeabilityCaMax
public Node Vm
public double Vshift
public Node Cai
public Node ATP
public Node gate
public Node pRP
public Node pAP
public Node pAI
public Node pC
public Node pU
public Node pUCa
public Node CaDiadic
public Node sumCa
Constructor Detail |
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public ICaL()
Method Detail |
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protected void prepare()
MembraneTransporter
prepare
in class MembraneTransporter
Component.prepare()
protected void calculate(double t)
MembraneTransporter
calculate
in class CfChannel
t
- timeReactor.calculate(double)
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