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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca.TroponinNL_RK
public class TroponinNL_RK
Troponin of Negroni and Lascano contraction model. Differential equation of ADP production and ATP- and Pi-dependency are incorporated.
Field Summary | |
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Node |
ADP
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double |
Km_ATP
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double |
KmPi
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Node |
Pi
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Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK |
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CaTotal |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL |
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alfa1, alfa2, alfa3, alfa4, alfa5, ATP, ATPconsumingRate, ATPconsumption, beta1, beta2, beta3, bias, Ca, Cai, crossBridge, dATP, pCa, pCaCB, pCB, Q1, Q2, Q3, Q4, Q5, t0, TCa, TCaCB, TCB |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer |
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free, total |
Fields inherited from class org.simBio.core.Parameter |
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value |
Constructor Summary | |
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TroponinNL_RK()
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Method Summary | |
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protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL |
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getCBbound, prepare |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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public double Km_ATP
public double KmPi
public Node Pi
public Node ADP
Constructor Detail |
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public TroponinNL_RK()
Method Detail |
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protected void calculate(double t)
Reactor
calculate
in class TroponinNL_RK
t
- elapsed time (ms)
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