org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca
Class TroponinNL_RK

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
                      org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL
                          org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK
                              org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca.TroponinNL_RK

All Implemented Interfaces:

Node

public class TroponinNL_RK
extends TroponinNL_RK

Troponin of Negroni and Lascano contraction model. Differential equation of ADP production and ATP- and Pi-dependency are incorporated.

Version:

$Log: TroponinNL_RK.java,v $ Revision 1.1 2005/11/01 06:32:41 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:40 sarai rearrenge folder structure as a Maven style Revision 1.2 2005/08/04 08:43:05 sarai revise Javadoc to suppress Warnings
2004/12/17 05:43:03 update
2004/09/16 10:32:07 Created
2004/09/17 05:22:05 ATP and Pi dependencies are ectracted.
2004/09/15 The Hill coefficient of ATP factor is corrected to 3 according to Matsuoka et al, 2004

Author:

Nobuaki Sarai

See Also:

Matsuoka et al, PBMB 85: 279-299, 2004 Negroni JA and Lascano EC, J Mol Cell Cardiol 28: 915-929, 1996.
XML example explanation

Field Summary

Node	ADP
double	Km_ATP
double	KmPi
Node	Pi

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK

CaTotal

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

alfa1, alfa2, alfa3, alfa4, alfa5, ATP, ATPconsumingRate, ATPconsumption, beta1, beta2, beta3, bias, Ca, Cai, crossBridge, dATP, pCa, pCaCB, pCB, Q1, Q2, Q3, Q4, Q5, t0, TCa, TCaCB, TCB

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer

free, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

TroponinNL_RK()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

getCBbound, prepare

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Km_ATP

public double Km_ATP

KmPi

public double KmPi

Pi

public Node Pi

ADP

public Node ADP

Constructor Detail

TroponinNL_RK

public TroponinNL_RK()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Overrides:

calculate in class TroponinNL_RK

Parameters:

t - elapsed time (ms)