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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.ProtonLeak
public class ProtonLeak
Proton leak from cytosol to intremitochondoria.
Field Summary | |
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double |
Amp
amplifying factor described in Kuzumoto et al, 2007. |
Node |
dP
proton gradient of mitohocndrial inner membrane |
Node |
Hcell
proton concentration in cytosol (mM) |
Node |
Hmito
proton concentration in mitohocndria (mM) |
Node |
kLK1
rate constant of proton leak (mM/msec) |
double |
kLK2
rate constant of proton leak (/mV) |
Node |
rbuffermito
buffering capacity for proton in mitochondrial matrix |
Node |
Rcm
ratio of cytosol volume and mitochondria volume |
Fields inherited from class org.simBio.core.Parameter |
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value |
Constructor Summary | |
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ProtonLeak()
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Method Summary | |
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protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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public Node dP
public Node Hmito
public Node Hcell
public Node Rcm
public Node rbuffermito
public Node kLK1
public double kLK2
public double Amp
Constructor Detail |
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public ProtonLeak()
Method Detail |
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protected void calculate(double t)
Reactor
calculate
in class Reactor
t
- elapsed time (ms)
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