org.simBio.bio.matsuoka_et_al_2004.function.chemical
Class CN

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2004.function.chemical.CN

All Implemented Interfaces:

Node

public class CN
extends Reactor

effect of CN addition.

  kC4 = kC4_initial * 1 /(1 + ([Cyanide]/Km)^n))
 

Since:

rc20

Version:

$Log: CN.java,v $ Revision 1.1 2005/11/01 06:32:40 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:37 sarai rearrenge folder structure as a Maven style Revision 1.2 2005/08/04 08:43:05 sarai revise Javadoc to suppress Warnings
2005/02/01 08:52:41 Some comments were updated to make Javadoc.
2004/12/17 05:43:03 update
2004/09/29 04:10:02 Created

Author:

SAITO Ryuta

See Also:

XML example
explanation (Japanese, WORD doc)

Field Summary

Node	CN cyanide concentration
double	initial rate constant of complex IV
double	Km Michaelis constant of cyanide
double	n Hill coefficient of cyanide

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

CN()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

initial

public double initial

rate constant of complex IV

CN

public Node CN

cyanide concentration

Km

public double Km

Michaelis constant of cyanide

n

public double n

Hill coefficient of cyanide

Constructor Detail

CN

public CN()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)