org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme
Class CrossBridgeNL
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.CrossBridgeNL
- All Implemented Interfaces:
- Node
- Direct Known Subclasses:
- IsometricContraction, IsotonicContraction
public abstract class CrossBridgeNL
- extends Reactor
Cross bridge kinetics of Cardiac Muscle Model by Negroni and Lascano.
- Version:
- $Log: CrossBridgeNL.java,v $
Revision 1.1 2005/11/01 06:32:40 mikaelwing
First version of simBio hosted on sourceforge, version 0.3
Revision 1.1 2005/09/12 04:57:34 sarai
rearrenge folder structure as a Maven style
Revision 1.4 2005/08/29 02:02:49 sarai
dX/dT^2 is the same as in the Matsuoka et al, 2004
- Author:
- Nobuaki Sarai, modified by Kim
- See Also:
- Negroni JA and Lascano EC, A cardiac muscle model relating sarcomere dynamics to calcium kinetics. J Mol Cell Cardiol 28: 915-929, 1996.,
explanation (WORD doc)
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
forceExt
public Node forceExt
forceCB
public Node forceCB
halfsarcomerelength
public Node halfsarcomerelength
NewCBF
protected double NewCBF
optimumHSL
protected double optimumHSL
KForceEC
protected double KForceEC
ZeroForceEL
protected double ZeroForceEL
KForceLinearEc
protected double KForceLinearEc
forceFactor
protected double forceFactor
ForceEcomp
protected double ForceEcomp
h
public Node h
troponin
public TroponinNL troponin
InextensibleLength
public Node InextensibleLength
CrossBridgeNL
public CrossBridgeNL()
getCBfactor
public double getCBfactor()
- Returns:
- dydtCBL2
getEffectiveFraction
public double getEffectiveFraction()
- Returns:
- -20(hSL-optimumHSL)2
calculate
protected void calculate(double t)
- calculate the rate of change in the cross bridge length, dX/dt
- Specified by:
calculate
in class Reactor
- Parameters:
t
- elapsed time (ms)
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