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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter org.simBio.bio.matsuoka_et_al_2003.current.pipette.Pipette org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp
public class VoltageClamp
voltage clamp protocol.
Field Summary | |
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double |
Cm
membrane capacitance |
double |
holdingPotential
basal potential for simulation |
Node |
observedCurrent
current through the cell membrane |
double |
testPotential
designated potential for simulation |
Node |
timeStep
time step for integral calculation |
Node |
Vm
membrane potential |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.pipette.Pipette |
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elapsedTime, interval, offset, onset |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter |
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cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total |
Fields inherited from class org.simBio.core.Parameter |
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value |
Constructor Summary | |
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VoltageClamp()
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Method Summary | |
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protected void |
calculate(double t)
to keep Vm constant, Iext is applied. |
protected void |
prepare()
construct null current |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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public Node observedCurrent
public Node timeStep
public Node Vm
public double Cm
public double testPotential
public double holdingPotential
Constructor Detail |
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public VoltageClamp()
Method Detail |
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protected void calculate(double t)
calculate
in class MembraneTransporter
t
- timeMembraneTransporter.calculate(double)
protected void prepare()
MembraneTransporter
prepare
in class Pipette
Component.prepare()
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