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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter org.simBio.bio.matsuoka_et_al_2003.current.Diffusion
public class Diffusion
Calculate current component of K, Na & Ca ion according to the diffusion.
Field Summary | |
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Node |
Cai
concentration of intracellular Ca2+ [mM] |
Node |
Cao
concentration of extracellular Ca2+ [mM] |
Node |
Ki
concentration of intracellular K+ [mM] |
Node |
Ko
concentration of extracellular K+ [mM] |
Node |
Nai
concentration of intracellular Na+ [mM] |
Node |
Nao
concentration of extracellular Na+ [mM] |
double |
permeabilityCa
membrane permeability for Ca2+ |
double |
permeabilityK
membrane permeability for K+ |
double |
permeabilityNa
membrane permeability for Na+ |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter |
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cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total |
Fields inherited from class org.simBio.core.Parameter |
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value |
Constructor Summary | |
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Diffusion()
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Method Summary | |
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protected void |
calculate(double dt)
current = permeability * concentration gradient (in - out) |
Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter |
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prepare |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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public Node Nai
public Node Nao
public Node Ki
public Node Ko
public Node Cai
public Node Cao
public double permeabilityNa
public double permeabilityK
public double permeabilityCa
Constructor Detail |
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public Diffusion()
Method Detail |
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protected void calculate(double dt)
calculate
in class MembraneTransporter
dt
- time
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