org.simBio.bio.matsuoka_et_al_2003.current
Class Diffusion

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      org.simBio.bio.matsuoka_et_al_2003.current.Diffusion

All Implemented Interfaces:

Node

public class Diffusion
extends MembraneTransporter

Calculate current component of K, Na & Ca ion according to the diffusion.

Since:

rc20

Version:

$Revision: 1.1 $

Author:

Nobuaki Sarai, modified by B.J. KIM

See Also:

Matsuoka et al, 2003
explanation (Japanese, WORD doc)
Caleak XML example explanation (Japanese, WORD doc)
Catransfer XML example explanation (Japanese, WORD doc)

Field Summary

Node	Cai concentration of intracellular Ca2+ [mM]
Node	Cao concentration of extracellular Ca2+ [mM]
Node	Ki concentration of intracellular K+ [mM]
Node	Ko concentration of extracellular K+ [mM]
Node	Nai concentration of intracellular Na+ [mM]
Node	Nao concentration of extracellular Na+ [mM]
double	permeabilityCa membrane permeability for Ca2+
double	permeabilityK membrane permeability for K+
double	permeabilityNa membrane permeability for Na+

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Diffusion()

Method Summary

protected void

calculate(double dt) current = permeability * concentration gradient (in - out)

Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

prepare

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Nai

public Node Nai

concentration of intracellular Na+ [mM]

Nao

public Node Nao

concentration of extracellular Na+ [mM]

Ki

public Node Ki

concentration of intracellular K+ [mM]

Ko

public Node Ko

concentration of extracellular K+ [mM]

Cai

public Node Cai

concentration of intracellular Ca2+ [mM]

Cao

public Node Cao

concentration of extracellular Ca2+ [mM]

permeabilityNa

public double permeabilityNa

membrane permeability for Na+

permeabilityK

public double permeabilityK

membrane permeability for K+

permeabilityCa

public double permeabilityCa

membrane permeability for Ca2+

Constructor Detail

Diffusion

public Diffusion()

Method Detail

calculate

protected void calculate(double dt)

current = permeability * concentration gradient (in - out)

Overrides:

calculate in class MembraneTransporter

Parameters:

dt - time