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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
public class PKA
PKA module.
Broyden method function(F) F0: cAMP=cAMPtot-(ARCI+2.0*A2RCI+2.0*A2RI) F1: PKA=2.0*PKAItot-(RCI+ARCI+A2RCI+PKACI_PKI)
Field Summary | |
---|---|
Node |
A2RCI
A2RCI concentration (mM) |
Node |
A2RI
A2RI concentration (mM) |
Node |
ARCI
ARCI concentration (mM) |
Node |
cAMP
cAMP concentration (mM) |
Node |
cAMPtot
total cAMP concentration (mM) |
MathMultivariableFunction |
f13
Broyden function |
MathMultivariableFunction |
f14
|
double |
KA
|
double |
KB
|
double |
KD
|
double |
KPKI
|
Node |
PKA
PKA concentration (mM) |
Node |
PKACI_PKI
PKA and PKI complex concentration (mM) |
double |
PKAtot
|
Node |
PKI
protein kinase inhibitor (mM) |
double |
PKItot
|
Node |
RCI
RCI concentration (mM) |
Fields inherited from class org.simBio.core.Parameter |
---|
value |
Constructor Summary | |
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PKA()
|
Method Summary | |
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protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
protected void |
prepare()
親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。 |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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public Node cAMPtot
public Node cAMP
public Node PKA
public Node ARCI
public Node A2RCI
public Node A2RI
public Node RCI
public Node PKACI_PKI
public Node PKI
public double PKAtot
public double KPKI
public double PKItot
public double KA
public double KB
public double KD
public MathMultivariableFunction f13
public MathMultivariableFunction f14
Constructor Detail |
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public PKA()
Method Detail |
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protected void prepare()
Parameter
prepare
in class Parameter
Component.prepare()
protected void calculate(double t)
Reactor
calculate
in class Reactor
t
- elapsed time (ms)
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