|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump
public class ICaPump
Ca pump on network SR.
ICaPump
Field Summary | |
---|---|
double |
a
|
Node |
ADP
|
double |
amplitudePKAf
to modulate PKA effect |
Node |
ATP
intracellular ATP concentration (mM) |
double |
b
|
Node |
Cai
Ca2+ concentration in cytoplasm (mM) |
Node |
Cao
Ca2+ concentration in SR (mM, uptake site compartment) |
Node |
dATP
variation of ATP concentration (mM/ms) |
double |
F
Faradey constant |
double |
hill
|
double |
KmATP
mM, dissociation const for ATP binding within cytoplasm |
Node |
KmCaCp
mM, dissociation const for Ca binding within cytoplasm |
double |
KmCaSR
mM, dissociation const for Ca binding within SR |
Node |
Pi
|
Node |
PLBphos
ratio of phosphorylated fraction of phospholamban |
Node |
Vi
cell volume accessible for ion diffusion |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier |
---|
amplitude, Cm, E1A, E1B, E2A, E2B, gate, k1, k2, k3, k4, stoichiometryCa, stoichiometryK, stoichiometryNa |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter |
---|
cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total |
Fields inherited from class org.simBio.core.Parameter |
---|
value |
Constructor Summary | |
---|---|
ICaPump()
|
Method Summary | |
---|---|
protected void |
calculate(double t)
calculate total charge movement using reduced 2 state model 2 state gateを用いて電流を計算する |
void |
prepare()
construct null current |
Methods inherited from class org.simBio.core.Composite |
---|
accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
---|
addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
---|
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
---|
addDydt, addValue, getValue, setValue |
Field Detail |
---|
public Node Cai
public Node Cao
public Node ATP
public Node ADP
public Node Pi
public Node Vi
public double F
public double KmCaSR
public Node KmCaCp
public double KmATP
public Node PLBphos
public double a
public double b
public double hill
public Node dATP
public double amplitudePKAf
Constructor Detail |
---|
public ICaPump()
Method Detail |
---|
public void prepare()
MembraneTransporter
prepare
in class MembraneTransporter
Component.prepare()
protected void calculate(double t)
Carrier
calculate
in class Carrier
t
- time
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |