org.simBio.bio.kurata_et_al_2005.molecule
Class CaBuffer_RK

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
                      org.simBio.bio.kurata_et_al_2005.molecule.CaBuffer_RK

All Implemented Interfaces:

Node

public class CaBuffer_RK
extends Buffer

Calculate using ordinary differential equation, working with analytic buffer.

Version:

$Revision: 1.1 $

Author:

biosim

Field Summary

double	alpha association constant (/ms)
Node	Ca free Ca concentration (mM)
Node	CaTotal total Ca concentration (mM)
double	Km Michaelis constant (mM)

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer

free, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

CaBuffer_RK()

Method Summary

protected void	calculate(double t) write equations here, and calculate dy over dt.
protected void	prepare() 親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Ca

public Node Ca

free Ca concentration (mM)

CaTotal

public Node CaTotal

total Ca concentration (mM)

Km

public double Km

Michaelis constant (mM)

alpha

public double alpha

association constant (/ms)

Constructor Detail

CaBuffer_RK

public CaBuffer_RK()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)

prepare

protected void prepare()

Description copied from class: Parameter

親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Overrides:

prepare in class Parameter

See Also:

Component.prepare()