Contents of the simBio package
simBio folders follow the
standard folder arrangement of
Apache Maven
src/main/java
Java source is put here.
- In org.simBio, there are starting classes which have a main method.
-
In org.simBio.bio there are classes which calculate biological models.
Below the org.simBio.bio package, they are generally shown as cited in papers. Except for these, please create suitable packages.
- org.simBio.bio.hodgkin_huxley_1952
- org.simBio.bio.matsuoka_et_al_2003
- org.simBio.bio.matsuoka_et_al_2004
- The base classes in org.simBio.core use integral calculus.
- In org.simBio.sim there are GUI and analysis classes.
src/main/resources
Documents which are referred to from Javadoc in the doc-files folder of Java source and the same folder go here.
src/test/java
Java source for the test classes are put here.
src/test/resources
Resources which are used by the test classes are put here.
lib
Used Java class libraries are put here.
src/xml
This is where model xml files go.
Model xml files which operate on this go below the xml folder of the same name as the Java source project folder. If there is just one xml file, an xml file of the same name is created.
- xml/hodgkin_huxley_1952.xml
- xml/matsuoka_et_al_2003/model.xml
- xml/matsuoka_et_al_2004/model.xml
src/docs
Documents go here.